Clustering via BANKSY matrix construction17 days ago
Data preprocessing | Computing the BANKSY neighborhood matrices | PCA, clustering, and visualization | Accessing the BANKSY matrix
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Domain segmentation (STARmap PLUS mouse brain)17 days ago
Data preprocessing | Running BANKSY | Session information
Multi-sample analysis (10x Visium Human DLPFC)17 days ago
Loading the data | Data preprocessing | Running BANKSY | Parsing BANKSY output | Session information
Parameter selection (VeraFISH Mouse Hippocampus)17 days ago
Loading the data | Parameters | AGF usage | k-geometric | lambda | Clustering parameters | Comparing cluster results | Session information
Spatial data integration with Harmony (10x Visium Human DLPFC)17 days ago
Loading the data | Data preprocessing | Running BANKSY | Run Harmony on BANKSY's embedding | Session information